Program > Browse abstracts by oral or poster

oral (22 documents )

A developmental condensin I complex assists the Paramecium PiggyMac domesticated transposase to carry out programmed DNA elimination
Valerio Vitali#, Mélanie Bazin-Gélis#, Thomas Balan#, Marc Guérineau#, Coralie ZANGARELLI, Olivier Arnaiz, Abdulwahab Altair, Aurélie Camprodon, Marina Giovannetti, Camille Poitrenaud, Emma Schumacher, Julien Bischerour, Anne-Marie Tassin, VInciane Régnier, Guillaume Chevreux, Sandra Duharcourt, Mireille Bétermier
abstract : oral
Transposition Mechanisms and Applications
sciencesconf.org:icte2024:548698

A dual histone code specifies the binding of heterochromatin protein Rhino to a subset of piRNA source loci
Abdou Akkouche, Emma Kneuss*, Susanne Bornelöv, Yoan Renaud, Evelyn L. Eastwood, Jasper Van Lopik, Nathalie Gueguen, Mingxuan Jiang, Pau Creixell, Stéphanie MAUPETIT MEHOUAS, Benjamin Czech Nicholson #, Emilie Brasset, Gregory J Hannon #
abstract : oral
Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:548692

Assessment of L1 retrotransposition in DNA repair deficient transgenic mouse models
Victoria Belancio, Dawn DeHaro, Claiborne Christian, Emily Stow, Benjamin Freeman, Melody Baddoo
abstract : oral
Transposable Elements in Health and Disease
sciencesconf.org:icte2024:529875

DNA methylation enables recurrent endogenization of giant viruses in a protist closely related to animals
Alex de Mendoza
abstract : oral
Transposable Elements, Genome Evolution and Adaptation, Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:519575

Endogenous Retrovirus-derived RNAs play an essential role during morphogenesis in zebrafish
Ana Ariza-Cosano, Pilar G. Marchante, Álvaro Méndez-Maguilla, Eva Álvarez Barrero, Francisco J. Sanchez-Luque, Guillermo Peris, José Luis García-Pérez, Miguel A. Moreno- Mateos, Sara R. Heras
abstract : oral
Transposable Elements in Health and Disease
sciencesconf.org:icte2024:529170

Fighting back epigenetic control: A story about the evolution and function of transposon-encoded anti-silencing systems
Taku Sasaki, Leandro Quadrana
abstract : oral
Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:529473

Genetic Architects: How the LINE-1 Transposon Crafts a Third of Your Genome
Akanksha Thawani, Eva Nogales, Kathleen Collins
abstract : oral
Transposition Mechanisms and Applications
sciencesconf.org:icte2024:512491

Horizontal transmission of diverse transposable elements generates introns across the eukaryotic tree of life
Landen Gozashti, Russell Corbett-Detig
abstract : oral
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:528660

Integron cassettes commonly integrate into bacterial genomes via widespread non-classical attG sites
Céline Loot, Gael A Millot, Egill Richard, Eloi Littner, Claire Vit, Frédéric Lemoine, Bertrand Néron, Jean Cury, Baptiste Darracq, Théophile Niault, Delphine Lapaillerie, Vincent Parissi, Eduardo PC Rocha, Didier Mazel
abstract : oral
Transposition Mechanisms and Applications
sciencesconf.org:icte2024:531142

Learning new infectivity tricks from old endogenous retroviruses
Maya Voichek, Kirsten-André Senti, Julius Brennecke
abstract : oral
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:527403

Local heterochromatin mitigates the cis-regulatory impact of SVA transposons in human brain development and disease
Vivien Horvath, Raquel Garza, Marie Jönsson, Pia Johansson, Anita Adami, Georgia Christoforidou, Ofelia Karlsson, Patricia Gerdes, Ninoslav Pandiloski, Christopher Douse, Johan Jakobsson
abstract : oral
Transposable Elements in Health and Disease
sciencesconf.org:icte2024:527220

Locus-level L1 DNA methylation profiling reveals the epigenetic and transcriptional interplay between L1s and their integration sites.
Sophie Lanciano, Claude Philippe, Arpita Sarkar, David Pratella, Cécilia Domrane, Aurélien J. Doucet, Dominic Van Essen, Simona Saccani, Laure Ferry, Pierre-Antoine Defossez, Gael Cristofari
abstract : oral
Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:528555

Nuclear translocation of LINE-1 encoded ORF1p alters nuclear envelope integrity in human neurons
Julia Fuchs, Rania ZNAIDI, Tom Bonnifet, Sandra SINNASSAMY, Olivia Massiani-Beaudoin, Philippe Mailly, Heloise Monnet, Damarys Loew, Bérangère Lombard, Rajiv L JOSHI
abstract : oral
Transposable Elements in Health and Disease
sciencesconf.org:icte2024:529205

Plant genome stability and extrachromosomal circular DNA (eccDNA): vicious or virtuous circle?
Marie Mirouze, Panpan Zhang, Christel Llauro, Abirami Soundiramourtty, Assane Mbodj, Mathieu Ingouff
abstract : oral
Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:530087

Rapid turnover of centromeric DNA reveals signatures of genetic conflict in Drosophila
Cécile Courret, Lucas Hemmer, Xiaolu Wei, Prachi Patel, Bryce Santinello, Xuewen Geng, Ching-Ho Chang, Barbara Mellone, Amanda Larracuente
abstract : oral
Transposable Elements, Genome Evolution and Adaptation, Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:521113

RetroMyelin: a retroviral role in the emergence of myelin
Tanay Ghosh, Rafael Almeida, Chao Zhao, Abdelkrim Mannioui, Elodie MARTIN, Alex Fleet, Civia Chen, Peggy Assinck, Sophie Ellams, Ginez Gonzalez, Stephen Graham, David Rowitch, Katherine Stott, Ian Adams, Bernard Zalc, Nick Goldman, David Lyons, Robin Franklin
abstract : oral
Transposable Elements, Genome Evolution and Adaptation, Transposable Elements in Health and Disease
sciencesconf.org:icte2024:512180

Reverse Transcriptase-Related Genes at the Intersection of Environmental Stress Response Pathways
Irina Arkhipova, Irina Yushenova, Fernando Rodriguez
abstract : oral
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:529431

Structures, Functions, and Adaptations of the Human LINE-1 ORF2 Protein
Eric Baldwin, Trevor Van Eeuwen, David Hoyos, Arthur Zalevsky, Egor Tchesnokov, Roberto Sanchez, Bryant Miller, Luciano Distefano, Francesc Xavier Ruiz, Matthew Hancock, Esin Işik, Carlos Mendez-Dorantes, Thomas Walpole, Charlie Nichols, Paul Wan, Kirsi Riento, Rowan Halls-Kass, Martin Augustin, Alfred Lammens, Anja Jestel, Paula Upla, Kera Xibinaku, Samantha Congreve, Maximiliaan Hennink, Kacper Rogala, Anna Schneider, Jennifer Fairman, Shawn Christensten, Brian Desrosiers, Gregory Bisacchi, Oliver Saunders, Nafeeza Hafeez, Wenyan Miao, Rosana Kapeller, Dennis Zaller, Andrej Sali, Oliver Weichenrieder, Kathleen Burns, Matthias Gotte, Michael Rout, Eddy Arnold, Benjamin Greenbaum, Donna Romero, John LaCava, Martin Taylor
abstract : oral
Transposable Elements in Health and Disease
sciencesconf.org:icte2024:510996

SUMOylation “hot spots” in piRNA-mediated TE silencing pathways revealed by diGly proteomics
Maria Ninova, Hannah Holmes, Katalin Fejes Toth, Alexei Aravin
abstract : oral
Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:529436

The piRNA pathway mediates transcriptional silencing of LTR-retrotransposons in the soma and germline of Aedes mosquitoes
Ezgi Taşköprü, Marianna Bacchi, Gijs Overheul, Pascal Miesen, Rebecca Halbach, Ronald Van Rij
abstract : oral
Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:525238

Transposable elements and antiviral immunity
Camille A Mayeux, Anaïs Larue, Daniel S Oliveira, Marion Varoqui, Hélène Henri, Rita Rebollo, Natacha Kremer, Severine Chambeyron, Marie Fablet
abstract : oral
Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:519738

“How do genes venture into the unknown? Mavericks—a new vector of horizontal gene transfer in animals”
Sonya Widen, Israel Campo Bes, Alevtina Koreshova, Pinelopi Pliota, Daniel Krogull, Alejandro Burga
abstract : oral
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:529609

poster (184 documents )

A comparative analysis of transposable elements in the subphylum Pucciniomycotina reveals a retrotransposon-driven expansion in the massive genomes of rust fungi
Emma CORRE, Emmanuelle Morin, Cécile Lorrain, Sébastien Duplessis
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:529199

A new approach to assess the relationship between the exposome, LINE-1 methylation, and health
Valentina Bollati, Federica Rota, Chiara Favero, Simona Iodice, Michele Carugno, Elia Biganzoli
abstract : poster
Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:539765

A physiological explanation for the abundance of transposon DNA in bacteria
Roderich Roemhild, Călin Guet
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:527622

A role for transposons in the evolution of programmed DNA elimination in Mesorhabditis nematodes
Brice Letcher, Caroline Launay, Eva Wenger, Lewis Stevens, Mark Blaxter, Marie Delattre
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:522616

Alu Elements and Structural Variants in BRCA1: Unveiling Genetic Puzzles in Korean Women's Breast Cancer
SEYOUNG MUN, Kyudong Han
abstract : poster
Transposable Elements in Health and Disease
sciencesconf.org:icte2024:546759

An atlas of Alu exons across human tissues
Emerson Hunter, Robert Wang, Yi Xing
abstract : poster
Transposable Elements in Health and Disease
sciencesconf.org:icte2024:530323

Analysis of TE population in polyploid oat reveals subgenome specific activity patterns
Carlotta Marie Wehrkamp, Matthias Heuberger, Moritz Feuchter, Yannick Revaz, Thomas Wicker
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:529802

Antagonistic coevolution of telomeric TEs and their host across the Drosophila genus
Jae Hak Son, Weihuan Cao, Mia Levine, Christopher Ellison
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:529049

Aphid defense strategies, symbiotic dynamics and the role of transposable elements in parasitoid interactions
Mariane Possignolo Gomes, Fernando Consoli, Nicolas Parisot, Tobias Baril, Clément Goubert, Rita Rebollo
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:525556

ASCT2, but not ASCT1, is a functional receptor for Syncytin-1-induced cell fusion
Krystof Stafl, Martin Travnicek, Jiri Hejnar, Katerina Trejbalova
abstract : poster
Transposable Elements in Health and Disease
sciencesconf.org:icte2024:529138

Assembly dynamics of the replicative transposition complex of Tn4430 in vitro and in vivo
Loïc Codemo, Claire Stulemeijer, Nicolas Aryanpour, Bernard Hallet
abstract : poster
Transposition Mechanisms and Applications
sciencesconf.org:icte2024:523735

At the crossroads of epigenetic pathways: H3K27me3 and transposable elements
Margaux Olivier, Thierry Pélissier, Corinne Gaudichet, Marie-Noëlle Pouch-Pélissier, Olivier MATHIEU
abstract : poster
Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:540664

atena: an R/Bioconductor package for the analysis of transposable elements
Beatriz Calvo-Serra, Robert Castelo
abstract : poster
Transposable Elements in Health and Disease
sciencesconf.org:icte2024:540512

B chromosome repetitive composition and interference in germline expression of Transposable Elements and genes: insights from Drosophila melanogaster
Ana Beatriz Stein Machado Ferretti, Camila Avelino, Diogo Milani, Emiliano Martí, Kaylah B. Samuelson, Paulo B. Belato, Josefa Gonzalez, Maria D. Vibranovski, Stacey L Hanlon, Diogo C. Cabral-de-Mello
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:538696

Back to TE future: Understanding the fitness effect of transposable element mobilization under climate change scenarios
Pol VENDRELL MIR, Basile Leduque, Leandro Quadrana
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:529627

Benchmarking TE annotation tools for non-model plant species with TEgenomeSimulator
Ting-Hsuan Chen, Cecilia Deng, Susan Thomson
abstract : poster
Transposition Mechanisms and Applications
sciencesconf.org:icte2024:528692

Bruno is a host co-factor that establishes natural variation in P-element transposition
Modupeola Bolaji, Copeland Natalie, Erin Kelleher
abstract : poster
Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:529990

Can repetitive elements lead to speciation through chromosomal rearrangements?
Camille Cornet, Kay Lucek
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:528447

Canonical and non-canonical cutting activities of LINE-1 endonuclease
Bryant Miller, Trevor Van Eeuwen, Allison O'Brian, Benedict Smail, Kathleen Burns, Martin Taylor
abstract : poster
Transposition Mechanisms and Applications
sciencesconf.org:icte2024:529916

CAULIFINDER: a package for the automatic detection and annotation of endogenous viral sequences of Caulimoviridae
Héléna Vassilieff, Florian Maumus, Pierre-Yves Teycheney, Nathalie Choisne, Sana Haddad, Veronique Jamilloux, Vikas Sharma, Delphine GIRAUD, Mariène Wan, Saad Serfraz, Andrew Geering
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:540380

CDCA7: A Key Contributor to Transposon DNA Methylation in Natural Arabidopsis Populations
Pierre Bourguet, Zdravko J Lorković, Darya Kripkiy Casado, Valentin Bapteste, Magnus Nordborg, Frédéric Berger, Eriko Sasaki
abstract : poster
Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:529826

Cell response to incoming retroviral genomes - Role of the BRCA1/2 DNA repair pathway on the regulation of non-integrated and integrated viral DNAs
Delphine LAPAILLERIE, Camille Tumiotto, Suzanne Figueiredo, Olivier Delelis, Francesca Di Nunzio, Jacques Dutrieux, Paul Lesbats, Vincent Parissi
abstract : poster
Transposition Mechanisms and Applications
sciencesconf.org:icte2024:518516

Characterizing the transposable element landscape of the vertebrate water-to-land transition
Francisco Javier Falcon Chavez, Elly Tanaka, Diego Rodriguez-Terrones
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:529766

Chromatin self-defence against Transposable Elements: role of a specific histone variant during D. melanogaster oogenesis
Maud Ginestet, Anahi Molla-Herman, Jean René Huynh, Clément Carré
abstract : poster
Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:525789

Co-opted endogenous retrovirus governed transcriptional and post-transcriptional regulation of Pregnancy Specific Glycoprotein 9 (PSG9) locus in the development of healthy and preeclamptic placentation
Manvendra Singh
abstract : poster
Transposable Elements in Health and Disease
sciencesconf.org:icte2024:527059

Coevolution between transposable elements and fungal plant pathogen genomes shapes the genome architecture, plasticity, and adaptation
Cécile Lorrain, Ivona Glavincheska, Corre Emma, Sébastien Duplessis
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:529082

Comparing the transposon landscapes of a putative ancient asexual and a sexual non-marine ostracod (Crustacea, Arthropoda)
Fernando Rodriguez, Irina Arkhipova, Koen Martens, Isa Schön
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:529274

Contribution of transposable elements in the sex gap longevity of different Drosophila species
Miriam Merenciano, Sonia Janillon, Camille Mermet-Bouvier, Nelly Burlet, Matthieu Boulesteix, Marie Fablet, Cristina Vieira
abstract : poster
Transposable Elements in Health and Disease
sciencesconf.org:icte2024:528778

Contribution of transposable elements to the host shift in cactophilic Drosophila species
Daniel Siqueira de Oliveira, Maria Pilar Garcia Guerreiro, François SABOT, Alejandra Bodelon, William Nunes, Claudia Carareto, Cristina Vieira
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:529748

Contribution of variable TE content on phenotype and plasticity in Drosophila melanogaster
Anaïs Larue, Miriam Merenciano, Sonia Janillon, Agnès Vallier, Marie Fablet, Patricia Gibert, Abdelaziz Heddi, Severine Chambeyron, Rita Rebollo, Cristina Vieira
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:528907

Copy number alteration signal from plasma DNA LINE-1 targeted bisulfite sequencing: a new non-invasive multi-cancer detection marker
Klaus Von GRAFENSTEIN, Anissa MECHRI, Kévin DA SILVA, Victoria Dixon, Marine Gorse, Samantha ANTONIO, Julien Masliah-Planchon, David GENTIEN, Christophe Le Tourneau, Maud Kamal, Ivan Bièche, Charlotte PROUDHON
abstract : poster
Transposable Elements in Health and Disease
sciencesconf.org:icte2024:538656

Crosstalk between the innate immune system and retroelements in human induced pluripotent stem cells.
James Holt, Liane Fernandes, Rachel Wilson, Elena Bochukova, Pierre Maillard, Helen Rowe
abstract : poster
Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:528666

DANTE and DANTE_LTR: computational pipelines implementing lineage-centered annotation of LTR-retrotransposons in plant genomes
Petr Novak, Pavel Neumann, Nina Hoštáková, Macas Jiří
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:540255

De novo identification of Transposable Elements from RNA-seq data
Sasha Darmon, Vincent Lacroix, Arnaud Mary
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:540457

Deciphering the role of miR845 in the epigenetic regulation of transposable elements in Brassicaceae
Corinne MHIRI, Armand GARCIA, Florian Maumus, Nathalie Choisne, Marie-Angèle GRANDBASTIEN, Filipe BORGES
abstract : poster
Transposable Elements, Genome Evolution and Adaptation, Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:539344

Deciphering the role(s) of PRC2-Ezl1 mediated histone H3 modifications in programmed DNA elimination in Paramecium
Thomas Balan, Marina Giovannetti, Guillaume Cheuvreux, Raphaël Margueron, Sandra Duharcourt
abstract : poster
Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:537970

Determining the genetic, environmental and developmental basis of heritable transposition in Arabidopsis thaliana
Mireia Bueno Merino, Basile Leduque, Pol Vendrell-Mir, Leandro Quadrana
abstract : poster
Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:539097

Developments in Dfam, an Open Community Resource for Transposable Element Families, Sequence Models, and Genome Annotations
Anthony Gray, Jessica Storer, Clément Goubert, Travis Wheeler, Robert Hubley, Arian Smit
abstract : poster
Education and outreach (poster only)
sciencesconf.org:icte2024:540632

Dissecting the role of TE-mediated immune responses following epigenetic treatment in Acute Myeloid Leukemia (AML)
Hale Tunbak, Ozgen Deniz
abstract : poster
Transposable Elements in Health and Disease
sciencesconf.org:icte2024:540364

DNA virus infections shape transposable element activity in vitro and in vivo
Jiang Tan, Eva Neugebauer, Vedran Franke, Anna Katharina Kuderna, Justine Laguisquet, Armin Ensser, Thomas Stamminger, Thomas Gramberg, Emanuel Wyler, Florian Full
abstract : poster
Transposable Elements in Health and Disease
sciencesconf.org:icte2024:529903

Dynamic genomes of Hydra reveal anciently active repetitive elements of animal chromosomes
Tetsuo Kon, Koto Kon-Nanjo, Tracy Chih-Ting Koubkova Yu, Diego Rodriguez-Terrones, Francisco Javier Falcon Chavez, Daniel E. Martínez, Elly Margaret Tanaka, Robert E. Steele, Thomas W. Holstein, Oleg Simakov
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:529153

Effect of weight loss on the methylation of human sperm transposable elements
Marie-Charlotte Dumargne, Romain Barrès
abstract : poster
Transposable Elements in Health and Disease
sciencesconf.org:icte2024:529031

Effective population size does not explain long-term variation in genome size and transposable elements content variation
Alba Marino, Gautier Debaecker, Anna-Sophie Fiston-Lavier, Annabelle Haudry, Benoit Nabholz
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:528454

Endogenous retrotransposon activity in the Drosophila intestine - towards the mechanisms of action of selfish DNA in the soma
Natalia Rubanova, Fabienne Chalvet, Sophie Netter, MICKAEL POIDEVIN, Nicolas Servant, Allison J. Bardin, Katarzyna (Kasia) Siudeja
abstract : poster
Transposable Element Control and Epigenetics, Transposable Elements in Health and Disease
sciencesconf.org:icte2024:518649

Environment impacts the distribution of Copia elements in metazoan.
KHOULOUD KLAI, LAURE LAMOTHE, Sarah Farhat, Dominique Higuet, ERIC BONNIVARD
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:543640

Epi/genetic adaptation of perennial plants to climate change, OPTIMAE project
Patricia Mallegol, Sylvain Hanteville, Maryline Cournol, Anne-Laure Fanciullino, Muriel Bahut, Claudine Landes, Aurélie Berard, Aurélie Canaguier, Isabelle Le-Clainche, Charles-Elie rabier, Damien Hinsinger, Patricia Faivre-Rampant, Etienne Bucher, Sandrine Balzergue, Jean-Marc Celton
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:534371

Epigenetic regulation of repetitive DNA in insect Tribolium castaneum
Evelin DESPOT-SLADE, Marin Volarić, Brankica Mravinac, Nevenka Meštrović
abstract : poster
Transposable Elements, Genome Evolution and Adaptation, Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:529281

Epigenetic transposon regulation in a 3D cellular model of MORC2-associated neurodevelopmental disorders
Fereshteh Dorazehi, Laura Castilla Vallmanya, Ninoslav Pandiloski, Melina Koutounidou, Georgia Christoforidou, Pia Johansson, Johan Jakobsson, Christopher Douse
abstract : poster
Transposable Elements in Health and Disease
sciencesconf.org:icte2024:539279

Evolution of Drosophila paralogs in the light of their transposable element neighborhood
Assia Benmehdia, Cassandra BOMPARD, Carène RIZZON, Emmanuelle Lerat
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:529075

Evolutionary dynamics of Transposable Elements in Brachypodium distachyon based on a Pangenomic Approach
Somia SAIDI, Johann CONFAIS, Hadi QUESNEVILLE
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:529289

Evolutionary Dynamics, and Functional Implications of the Antiviral Immune Protein Kinase R (PKR) Locus in Myotis Bats
Saba Mottaghinia, M Elise Lauterbur, Juan Manuel Vazquez, Sarah Maesen, Amandine Le Corf, Clara Loyer, Léa Gaucherand, Andrea Cimarelli, Sébastien Pfeffer, Carine Rey, David Enard, Peter H Sudmant, Lucie Etienne
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:540351

Exploring the contribution of transposable elements to the evolution of tetrapod developmental and regenerative programs
Diego Rodriguez-Terrones, Francisco Falcon, Elly Tanaka
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:529866

Exploring the impact of transposable element activity on genome stability and organization during meiosis
Elena De La Mata, Aurélie Teissandier, Deborah Bourc'his
abstract : poster
Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:537791

Exploring the Role of a CENPBL Gene Family in Paramecium Genome Rearrangements
Coralie Zangarelli, Olivier Arnaiz, Linda Sperling, Dylan Ben Hadj, Eric Meyer, Mireille Bétermier, VInciane Régnier
abstract : poster
Transposable Elements, Genome Evolution and Adaptation, Transposition Mechanisms and Applications
sciencesconf.org:icte2024:539885

Exploring transposable element-mediated adaptive trait evolution using a large fungal pathogen genome panel
Tobias Baril, Daniel Croll
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:528451

Fanzor - a cross-domain programmable RNA-guided endonuclease
Makoto Saito, Peiyu Xu, Soumya Kannan, Han Altae-Tran, Samuel Chau-Duy-Tam Vo, AnAn Desimone, Rhiannon K. Macrae, Feng Zhang
abstract : poster
Transposition Mechanisms and Applications
sciencesconf.org:icte2024:529374

Functional Adaptations to their Host Underlie the Evolutionary Diversification of Endogenous Retroviruses
Kirsten Senti, Baptiste Rafanel, Dominik Handler, Carolin Kosiol, Christian Schlötterer, Julius Brennecke
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:529380

Genome-wide mapping of LINE-1 elements and their methylation states through targeted long-read sequencing
Aidan Burn, Cheuk-Ting Law, Tatiana Cajuso-Pons, Jennifer Karlow, Adam Voshall, Eunjung Alice Lee, Kathleen H. Burns
abstract : poster
Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:529278

Genomic landscape of transposable elements and structural variation in wild house mouse populations across diverse environments
Yocelyn T. Gutierrez-Guerrero, Simon Orozco-Arias, Josefa Gonzalez, Michael W. Nachman
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:540542

Genomic Responses to Interspecific Hybridization in Drosophila: Insights into Gene Expression, Transposable Elements, and Hybrid Sterility
Maria Pilar Garcia Guerreiro
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:533278

GraffiTE: a Unified Framework to Analyze Transposable Element Insertion Polymorphisms using Genome-graphs
Cristian Groza, Xun Chen, Travis Wheeler, Guillaume Bourque, Clément Goubert
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:525783

H4K16ac mediated transposable over expression leads to inflammation in Preeclampsia
Manthan Patel, Ahmed S Ali, Adrianna Dabrowska, Ioannis Sarropoulos, Fanny Boulet, Ajay Kumar Sinha, Pradeepa Madapura M
abstract : poster
Transposable Elements in Health and Disease
sciencesconf.org:icte2024:528864

Harnessing ERV Expression to Ignite Anti-Tumor Immunity
Maria Goicoechea
abstract : poster
Transposable Elements in Health and Disease
sciencesconf.org:icte2024:539633

HEBE Project: Healthy aging versus inflamm-aging: the role of physical exercise in modulating LINE-1 methylation as a potential biomarker for lifestyle improvement
Valentina Bollati, Federica Rota, Benedetta Albetti, Simona Iodice, Francesca Bianchi, Daniela Lucini, Mario Clerici, Elia Biganzoli, The HEBE Consortium
abstract : poster
Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:539761

Hepatitis B virus polymerase restricts LINE-1 mobility
Yasuo Ariumi
abstract : poster
Transposable Elements in Health and Disease
sciencesconf.org:icte2024:525893

HERVH protects the human genome from transposition of young retroelements in the early embryo
Alexandra Kondrashkina, Manvendra Singh, Jose Garcia-Perez, Laurence Hurst D, ZSuzsanna Izsvak
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:529819

Hicberg – Hi-C Biological Estimation of Reapeated elements in Genomes
Sébastien Gradit, Romain Koszul, Axel Cournac
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:547032

Host chromatin invasion by retroviral genomes
Delphine Lapaillerie, Carole Benedetti, Michel Autin, Camille Tumiotto, Olivier Delelis, Marc RUFF, Paul Lesbats, Vincent Parissi
abstract : poster
Transposition Mechanisms and Applications
sciencesconf.org:icte2024:518513

How Does Wolffia (Lemnaceae), the Smallest Flowering Plant, Silence Transposable Elements?
Buendia Avila Daniel, Rodolphe Dombey, Verónica Barragán Borrero, Arturo Marí Ordóñez
abstract : poster
Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:529295

How genes endure intronic transposable elements.
Victor Billon, Gael Cristofari
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:538874

Identification of Transposable Element families from pangenome polymorphisms with pantera
Pío Sierra, Richard Durbin
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:529332

Identifying LTR-retrotransposons inserted as tandem elements sharing internal LTRs
Noemia Morales-Díaz, Josep Casacuberta, Raúl Castanera
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:538704

Identifying regulators of LINE-1 expression using FACS-based CRISPR Screens
Jupiter Kalinowski, Carlos Mendez-Dorantes, Audrey Muscato, Phillip Schofield, David Root, Kathleen H. Burns
abstract : poster
Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:526618

Impact of Transposable Elements insertion on apple genome evolution
Andréa Bouanich, Jean-Marc Celton, Claudine Landes
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:529774

Impact of transposable elements on transcriptional diversity in stressed plants
Antoine Lagarde, Axelle Costa, Camilo Pesantez, Guillaume Moissiard, Nathalie Picault
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:536246

Impacts of arboviral infections on transposable element transcript levels in Aedes aegypti.
Chloé Garambois, Matthieu Boulesteix, Marie Fablet
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:526460

Integrons are goldmines of anti-phage defense systems
Baptiste Darracq, Eloi Littner, Florence Depardieu, Julia Bos, Manon Brunie, David Bikard, Didier Mazel, Frédérique Le Roux, Eduardo Rocha, Céline Loot
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:540580

Interplay between the Xer system and the dissemination of antibioresistance in Acinetobacter baumannii
Philippe ROUSSEAU, Corentin BLANCHAIS, Carine Pages, François Cornet, Xavier Charpentier, Maria-Halima Laaberki, Patricia Siguier
abstract : poster
Transposition Mechanisms and Applications
sciencesconf.org:icte2024:528570

Investigating TE distribution across replication timing programmes in early mouse development
Yicong Chen, Maria-Elena Torres-Padilla
abstract : poster
Transposable Elements in Health and Disease
sciencesconf.org:icte2024:528512

Investigating the chromosomal instability signature of LINE-1 retrotransposition
Carlos Mendez-Dorantes, Jennifer Karlow, Xi Zeng, Phillip Schofield, Jupiter Kalinowski, Eunjung Alice Lee, Cheng-Zhong Zhang, Kathleen H. Burns
abstract : poster
Transposable Elements in Health and Disease
sciencesconf.org:icte2024:529391

Investigating the impact of transposons on complex brain functions and behaviours
Christoph Treiber
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:528794

Investigating the intersection of LINE-1 retrotransposition and DNA replication
Esin Isik, Carlos Mendez-Dorantes, Phil Schofield, Kathleen H. Burns
abstract : poster
Transposable Elements in Health and Disease
sciencesconf.org:icte2024:529701

Investigating the Role of ERV-Derived Transcripts in Amyotrophic Lateral Sclerosis Pathogenesis
Isabelle Heifetz Ament
abstract : poster
Transposable Elements in Health and Disease
sciencesconf.org:icte2024:521898

Investigating the role of transposable elements in human brain evolution
Patricia Gerdes, Raquel Garza, Chandramouli Muralidharan, Ofelia Karlsson, Anita Adami, Wiktor West, Jenny Johansson, Ninoslav Pandiloski, Diahann Atacho, Vivien Horvath, Johan Jakobsson
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:537473

Investigating the role of ZNF93 in L1 promoter DNA methylation
Aurélien J. Doucet, Claude Philippe, Sophie Lanciano, Pierre-Antoine Defossez, Gael Cristofari
abstract : poster
Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:540296

Is SINE and LINE transposable element evolution driven by nucleosome-positioning capacities?
Fabien Sassolas, Jérémy Barbier, Frederic Brunet, Anna Artigues, Benjamin Audit, Jean-Nicolas Volff
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:540102

Limited impact of the siRNA pathway on transposable element expression in Aedes aegypti
Alexander Bergman, Anna Beth Crist, Hervé Blanc, Lionel Frangeul, Hélène Lopez-Maestre, Sarah H. Merkling, Josquin Daron, Maria-Carla Saleh, Louis Lambrechts
abstract : poster
Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:529629

LINE1 expression and radio-response in rectal cancer cells
Leanne Herbert, Giuditta Viticchie', Sanya Aggarwal, Isla Richards, Richard Badge, Jonathan Lund, Alessandro Rufini, Cristina Tufarelli
abstract : poster
Transposable Elements in Health and Disease
sciencesconf.org:icte2024:529198

Locus-specific transposable elements in gene expression regulation
David C. Michael, Rebecca V Berrens
abstract : poster
Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:546642

LTR- Retrotransposon dynamics during the polyploidization and domestication of cotton
Lucia Campos Dominguez, Raúl Castanera, Corrine Grover, Guanjing Hu, Jonathan Wendel, Josep Casacuberta
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:539360

LTR-checker: deep-learning (DL) guided structural identification of LTR retrotransposon providing decreased computation demand and high flexibility
Jian-Feng Mao, Zhao-Yang Chen
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:526620

LTRpred2: De novo annotation of intact LTR-retrotransposons across the Eukaryotic Tree of Life
Svitlana Sushko, Adrián Contreras-Garrido, Hajk-Georg Drost, Detlef Weigel
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:539469

m6A RNA methylation-dependent regulation of endogenous retrovirus loci
Andrea Parham
abstract : poster
Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:537204

Manual versus automatic annotation of TEs: case studies from Drosophila melanogaster and Aedes albopictus
Alba Marino, Tomas Carrasco-Valenzuela, Anna-Sophie Fiston-Lavier, Matthieu Boulesteix
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:540012

Mapping transposable element activity in human brain development
Hanne Puype, Vanessa Vermeirssen
abstract : poster
Transposable Elements in Health and Disease
sciencesconf.org:icte2024:540158

Massively parallel identification of active LINE-1 promoters in human genomes.
Misaki MATSUO, Larisa OKOROKOVA, Simona Saccani, Dominic Van Essen, Gael Cristofari
abstract : poster
Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:529292

MCHelper automatically curates transposable element libraries across species
Simon Orozco-Arias, Pío Sierra, Richard Durbin, Josefa Gonzalez
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:528818

Mechanism of invasion and transposition of somatic transposable elements
Anaelle PATIN, Stéphanie MAUPETIT MEHOUAS, Nathalie Gueguen, Silke Jensen, Emilie Brasset
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:538859

Microbial single-cell RNA sequencing to investigate environmental triggers for ICEclc transfer competence activation in Pseudomonas
Benigno Valentina, Vladimir Sentchilo, Valentine Cyriaque, Rodrigo Ibarra-Chavez, Jonas Stenløkke Madsen, Jan Roelof van der meer
abstract : poster
Transposable Elements, Genome Evolution and Adaptation, Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:529657

Miniature inverted repeat transposable elements are enriched in boundaries of topologically associated domains in the carrot genome
Monika Szewczyk, Kinga Zygmuntowicz, Alicja Macko-Podgorni, Dariusz Grzebelus
abstract : poster
Education and outreach (poster only)
sciencesconf.org:icte2024:539311

Misdirected activity of antiviral proteins against syncytins
Veronika Krchlikova, Elisabeth Braun, Johanna Weiss, Smitha Srinivasachar Badarinarayan, Rishikesh Lotke, Isabell Haussmann, Frank Kirchhoff, Daniel Sauter
abstract : poster
Transposable Elements in Health and Disease
sciencesconf.org:icte2024:529305

MITE-driven dissemination of regulatory elements in the maize genome
Klaus VON GRAFENSTEIN, Abirami Soundiramourtty, Maud Fagny, Karine Alix, Johann Joets, Clémentine VITTE
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:539884

Mobile element insertions and structural variation in a large human population reference database
Alex Yenkin, Xuefang Zhao, Ryan Collins, Mark Walker, Jack Fu, Christopher Whelan, Emma Pierce-Hoffman, Cal Liao, Chelsea Lowther, Vahid Jallili, Nehir Kurtas, Daniel Ben-Isvy, Lily Wang, Alba Sanchis-Juan, Stephanie Hao, Harrison Brand, Michael Talkowski
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:540291

Mode, tempo, and functional consequences of transposable element mobilization in selfing and outcrossing Arabidopsis lyrata populations
Louna De Oliveira, Éléanore Lacoste, Corinne Cruaud, Christelle Blassiau, Sylvain Legrand, Xavier Vekemans, Jean-Marc Aury, Vincent Colot, Vincent Castric, Pierre Baduel
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:544365

Modeling the impact of L1 expression on colorectal cancer progression
Tatiana Cajuso Pons, Norihiro Goto, Aidan Burns, Law Cheuk Ting, Carlos Mendez-Dorantes, Wen Chi-Cheng, Omer H. Yilmaz, Kathleen H. Burns
abstract : poster
Transposable Elements in Health and Disease
sciencesconf.org:icte2024:529320

Modeling the role of transposable elements in the adaptation and evolution of host genomes
Poppy Gould, Gustavo Starvaggi Franca, Itai Yanai
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:529872

Nanopore sequencing unveils structural features of somatic and germline retrotransposons
Päivi Nummi, Tatiana Cajuso-Pons, Aurora Taira, Heli Kuisma, Niko Välimäki, Anna Lepistö, Laura Renkonen-Sinisalo, Selja Koskensalo, Toni T. Seppälä, Ari Ristimäki, Teijo Kuopio, Jan Böhm, Jukka-Pekka Mecklin, Annukka Pasanen, Oskari Heikinheimo, Ralf Bützow, Kathleen H. Burns, Lauri A. Aaltonen, Kimmo Palin
abstract : poster
Transposable Elements in Health and Disease
sciencesconf.org:icte2024:529722

NanoVar & NanoINSight: Characterization of genomic structural variants and transposable elements using low-depth nanopore sequencing
Asmaa Samy, Cheng Yong Tham, Touati Benoukraf
abstract : poster
Transposable Elements in Health and Disease
sciencesconf.org:icte2024:522414

New determinants of Ty1 LTR retrotransposon integration site selection in yeast
Beatrice Capuzzi, Pascale Lesage
abstract : poster
Transposition Mechanisms and Applications
sciencesconf.org:icte2024:539661

New REPET improvements: REPET V4.0, making life easier
Johann CONFAIS, Mariène Wan, Etienne BARDET, Hadi QUESNEVILLE
abstract : poster

sciencesconf.org:icte2024:539532

No Apparent Higher Frequency of Copy Number Alterations of the HERV-W_Xq22.3 Locus Region in Patients with Multiple Sclerosis
Jens Mayer, Judith Bellmann-Strobl, Friedemann Paul, Eckart Meese, Klemens Ruprecht
abstract : poster
Transposable Elements in Health and Disease
sciencesconf.org:icte2024:534781

Non-invasive multi-cancer detection targeting DNA hypomethylation of LINE-1 retrotransposons
Marine GORSE, CHARLINE BIANCHI, Victoria Dixon, Klaus VON GRAFENSTEIN, Chloé Azencott, Charlottte Proudhon
abstract : poster
Transposable Elements in Health and Disease
sciencesconf.org:icte2024:538714

Non-invasive multi-cancer diagnosis using DNA hypomethylation of LINE-1 retrotransposons
Marc Michel, Maryam Heidary, Anissa MECHRI, Kévin DA SILVA, Marine Gorse, Victoria Dixon, Klaus VON GRAFENSTEIN, Charlottte Proudhon
abstract : poster
Transposable Elements in Health and Disease
sciencesconf.org:icte2024:529354

Novel SOX transcription factors as L1 modulators in neurons
Juan Manuel Botto, Maria Eugenia Ferreiro, Gabriela O. Bodea, Sandra R. Richardson, Geoffrey J. Faulkner
abstract : poster
Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:529411

Nuclear cGAS Defends against Aberrant LINE1 Expression and Stabilizes Genomic Integrity
John Martinez, Francesco Moandini, Michael Meadow, Lucinda Fitzgibbons, Sung Jae Bae, Eric Hillpot, Seyed Ali Biashad, Matthew Simon, John Sedivy, Andrei Seluanov, Vera Gorbunova
abstract : poster
Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:529440

Oxford Nanopore Sequencing reveals complex mechanisms of repetitive DNA propagation in Tribolum castaneum
Marin Volarić, Evelin DESPOT-SLADE, Nevenka Meštrović, Damira Veseljak, Brankica Mravinac
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:529768

Oxidative stress response heterogeneity, at single cell and lineage level, could influence activation of Integrative and Conjugative Element ICEclc
Anthony Convers
abstract : poster
Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:529664

P elements in Drosophila willistoni group species
Stéphane Ronsseray, Bruno Da Silva, Clément Carré, Aurélie Hua-Van, Laure Teysset, Wolfgang Miller
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:529705

piRNA clusters adaptability after horizontal transfer of Transposable Element
Laure Teysset, Amna Asif Laidin, Karine Casier, Zoheir Ziriat, Stéphane Ronsseray, Clément Carré
abstract : poster
Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:519845

Profile and dynamics of LINE-1 RNA and ORF1p expression in the aged and diseased brain
Tom Bonnifet, Sandra SINNASSAMY, Olivia Massiani-Beaudoin, Philippe Mailly, Heloise Monnet, Damarys Loew, Bérangère Lombard, Rajiv Joshi, Julia FUCHS
abstract : poster
Transposable Elements in Health and Disease
sciencesconf.org:icte2024:527070

Real-time observation of uptake of mobilisable elements during bacterial experimental evolution
Yansong Zhao, Andrew D. Farr, Paul B. Rainey
abstract : poster
Transposable Elements, Genome Evolution and Adaptation, Transposition Mechanisms and Applications
sciencesconf.org:icte2024:531545

Recent reactivation of a pathogenicity-associated transposable element is associated with major chromosomal rearrangements in a fungal wheat pathogen
Thomas Badet, Sabina Moser Tralamazza, Alice Feurtey, Daniel Croll
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:518490

Recurrent molecular adaptation revealed by systematic cross-species protein interaction analyses of the Drosophila piRNA pathway
Sebastian Riedelbauch, Sung-Ya Lin, Harpreet Kuar, Mandy Jeske, Mie Levine, Ullrich Stelzl, Peter Andersen
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:529469

Regulatory evolution of inflammatory response through the lens of primate-specific transposable elements
Mengliang Ye, Maxime Rotival, Sebastian Amigorena, Elina Zueva
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:529799

RepetDB
Nicolas Francillonne, Mariène Wan, Nathalie Choisne, Raphaël Flores, Françoise Alfama-Depauw, Johann CONFAIS, Joelle Amselem, Hadi QUESNEVILLE
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:539066

Repression of HERV-K negatively impacts astrocyte development
Thanh Van Lam, Wen Liang, Salih Oezer, Andrea Kolak, Jakob Trendl, Bernhard Kuester, Michelle Vincendeau
abstract : poster
Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:528752

Reprogramming activates 55 specific polymorphic, functional LINE-1 loci in pluripotent stem cell genomes that were shown to be mobilized in human tumor cells
Gerald Schumann, Liam Childs, Julien Duc, Marc Friedli, Tiffany Kaul, Claude Philippe, Ulrike Held, Gael Cristofari, Didier Trono, Prescott Deininger
abstract : poster
Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:529540

Retrotransposon activity predicts cancer therapy response
Stephanie Eramo, Srinivas Ramachandran, Lynn Heasley, Raphael Nemenoff, Peter Kabos
abstract : poster
Transposable Elements in Health and Disease
sciencesconf.org:icte2024:529057

Revealing Insertion Outcomes of de novo LINE-1 Retrotransposition by an innovative Long-Read Sequencing method
Cheuk-Ting Law, Carlos Mendez-Dorantes, Kathleen H. Burns
abstract : poster
Transposition Mechanisms and Applications
sciencesconf.org:icte2024:529398

REXdb: Update coming soon
Pavel Neumann, Filippo Marino, Petr Novak, Jiří Macas
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:540309

Role of histone acetylation in the regulation of transposable elements in trophoblast cells
Charlie R Ince, Manthankumar Patel, Pradeepa Madapura M
abstract : poster
Transposable Element Control and Epigenetics, Transposable Elements in Health and Disease
sciencesconf.org:icte2024:540229

Role of LINE-1 promoter methylation in the development of PTSD in a mice model
Nicolás Merino-Véliz Merino-Véliz, Fernando J Bustos, Gloria Arriagada
abstract : poster
Transposable Elements in Health and Disease
sciencesconf.org:icte2024:529413

Role of retrotransposon RNA-binding proteins in Ty1 activity: proteomic identification by ChIRP-MS and comprehensive characterization
Hélène BONNET, Emmanuelle Fabre, Pascale Lesage
abstract : poster
Transposable Element Control and Epigenetics, Transposition Mechanisms and Applications
sciencesconf.org:icte2024:540188

Role of transposable elements in a parasitoid wasp ongoing speciation
Camille Heisserer, Mohamed Amine CHEBBI, Emilie Brasset, Silke Jensen, Elisabeth Huguet, Karen Kester, Thibaut Josse, Jean-Michel Drezen
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:529383

Role of Transposable elements in the transcriptional programming of CD4 T lymphocytes
Samira GHAZALI, Karl Laviolette, Julie Noguerol, Margot Zahm, Adeline Chaubet, Veronique Adoue, Olivier Joffre
abstract : poster
Transposable Elements in Health and Disease
sciencesconf.org:icte2024:529225

Selecting Score Thresholds for Alignment-based TE Annotation with Pseudo-Empirical False Discovery Rates
Robert Hubley, Arian Smit, Travis Wheeler
abstract : poster
Education and outreach (poster only)
sciencesconf.org:icte2024:540470

Small RNA biosynthesis in Duckweeds
Filipp Krasnovid, Rodolphe Dombey, Daniel Buendia, Veronica Barragan, Arturo Marí Ordóñez
abstract : poster
Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:540082

Small RNA Regulation of Endogenous Retroviruses
Andrea Schorn
abstract : poster
Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:529891

Small ruminants versus endogenous retroviruses: an evolutive showdown still in progress in the domestic goat genome
Marie Verneret, Caroline Leroux, Vincent Navratil, Thomas Faraut, Jocelyn Turpin, Emmanuelle Lerat
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:529193

soloLTRseeker: a new tool to identify soloLTR sequences
Estela Perez-Roman, Alexandros Bousios
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:540611

Specialized group II intron retrotransposons
Lucie GOMES, Maria COSTA
abstract : poster
Transposable Elements, Genome Evolution and Adaptation, Transposition Mechanisms and Applications
sciencesconf.org:icte2024:539540

Stem cells protection from and by transposable elements
Alexis CORNEC, Véronique MARTHIENS, Enzo POIRIER
abstract : poster
Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:538300

Storming TE-Storm: implications for short RNA-seq feasibility in transposon research examplified by ALS/FTLD (re)analysis
Natalia Savytska, Vikas Bansal
abstract : poster
Transposable Elements in Health and Disease
sciencesconf.org:icte2024:521617

Studying cassette excision dynamics in the sedentary chromosomal integron of Vibrio cholerae
Kevin Debatisse, thomas cokelaer, Egill Richard, Juliana Pipoli da Fonseca, Baptiste Darracq, Marc Monot, Didier Mazel, Céline Loot
abstract : poster
Transposition Mechanisms and Applications
sciencesconf.org:icte2024:539376

Systematic annotation of Helitron-like elements in eukaryote genomes using HELIANO
Zhen Li, Clément Gilbert, Haoran Peng, Nicolas Pollet
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:528013

Teaching transposon classification as a means to crowd source the curation of repeat annotation – a tardigrade perspective
Valentina Peona, Jacopo Martelossi, Transposable Element Course Participants, Alexander Suh
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:529913

TEFLoN2, an automized and accurate computational tool for detecting and analyzing insertions of transposable elements in population data
Anna-Sophie Fiston-Lavier, Corentin Marco, Clothilde Chenal, Fontaine Michael
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:528795

TEs as a major driver of genomic variation in trees ? Jumping MITEs in common beech revealed by TIPs and eccDNA
Abirami Soundiramourtty, Lauren Clément, Christel Llauro, Olivier Panaud, Christophe Plomion, Marie-Christine CARPENTIER, Jean-Marc Aury, Marie MIROUZE
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:528839

TEs in plant-microbe interaction revealed from total RNA-seq approach
Helba Cirino, Joel Nunes Leite Jr, Paula Turrini, Juliane Ishida, Priscila Antonello, Claudia B Monteiro-Vitorello, Luis E A Camargo, Silvana Creste, Marie-Anne Van Sluys
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:529944

TETrimmer: a tool to replace and assistant transposable element manual curation
JIANGZHAO QIAN
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:521038

The adaptive and variable transposable elements landscape of mosquitoes (Culicidae)
Jacopo Martelossi, Andrea Silverj, Chiara Albertini, Andrea Luchetti, Omar Rota-Stabelli, Lino Ometto
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:539857

The causes and consequences of low TE content in African mole-rats
Alyssa Fontanilla, Nikolas Tolar, Lenka Gahurova
abstract : poster
Transposable Elements, Genome Evolution and Adaptation, Transposable Elements in Health and Disease
sciencesconf.org:icte2024:539326

The HTLV-1c genomic graveyard reveals host-virus interactions
Natasha Jansz, Ashley Hirons, Nathan Smits, Damian Purcell, Geoffrey Faulkner
abstract : poster
Transposable Elements in Health and Disease
sciencesconf.org:icte2024:536796

The impact of transposable elements in ant evolution
Lukas Schrader, Joel Vizueta, Zijun Xiong, GAGA Consortium, Jacobus J. Boomsma, Guojie Zhang
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:529719

The impact of transposition on the evolvability potential of a fungal plant pathogen
Ivona Glavincheska, Bruce McDonald, Cécile Lorrain
abstract : poster
Transposable Elements, Genome Evolution and Adaptation, Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:529188

The importance of transposable element curation
Jessica Storer
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:536673

The Plant Mobile Domain proteins antagonize the Polycomb group protein-mediated gene silencing.
Lucas Jarry, Thierry Pélissier, Margaux Olivier, Julie Descombin, Marie-Noëlle Pouch-Pélissier, Claire Picart, Nathalie Picault, Guillaume Moissiard, Olivier MATHIEU
abstract : poster
Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:529240

The potential role of transposable elements in the development of Schistosoma mansoni
Cristian CHAPARRO, Toby Brann, Anna Protasio
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:539853

The role of LINE-1 elements in the induction of type I interferon following epigenetic dysregulation
Rocio Enriquez-Gasca, Poppy A. Gould, Hale Tunbak, James Holt, Liane P. Fernandes, Alba Herrero del Valle, Xi Wang, Sun Hur, Yorgo Modis, Helen Rowe
abstract : poster
Transposable Elements in Health and Disease
sciencesconf.org:icte2024:528967

The role of ORF1p in LINE-1 Retrotransposition
Farida Ettefa, Sarah Zernia, Srinjoy Sil, Johannes Stigler, Liam Holt
abstract : poster
Transposable Elements, Genome Evolution and Adaptation, Transposable Elements in Health and Disease, Transposition Mechanisms and Applications
sciencesconf.org:icte2024:528887

The role of TP53 on transposable elements in paediatric cancer
Brianne Laverty, Safa Majeed, David Malkin, Vallijah Subasri
abstract : poster
Transposable Elements in Health and Disease
sciencesconf.org:icte2024:539159

The role of transposable elements in pregnancy complications
Jennifer Frost, Samuele Amante, Hiroaki Okae, Eleri Jones, Brogan Ashley, Rohan Lewis, Jane Cleal, Matthew Caley, Takahiro Arima, Tania Mafucci, Miguel Branco
abstract : poster
Transposable Elements in Health and Disease
sciencesconf.org:icte2024:530857

The role of transposable elements in the evolution of reproductive barriers in hybridising birds
Valentina Peona, Reto Burri
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:529756

The role of transposable elements in the function and evolution of centromeres
Alexandros Bousios
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:529870

The Somatic Mosaicism across Human Tissues Network: A SMaHT look at Somatic Variation
Amy Lossie
abstract : poster
Education and outreach (poster only)
sciencesconf.org:icte2024:544327

The somatic piRNA pathway is progressively activated during embryonic development to effectively repress transposable elements in the adult stage of Drosophila melanogaster.
Aline MARTINS, Benjamin BERTIN, Nathalie Gueguen, Silke Jensen, Stéphanie MAUPETIT MEHOUAS, Emilie Brasset
abstract : poster
Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:528782

Tourist_15 – a Carrot MITE Family Rewires the Circadian Clock Regulatory Network by Redistribution of LHY Binding Sites
Alicja Macko-Podgorni, Wojciech Wesolowski, Kornelia Kwolek, Natalia Piasecka, Monika Szewczyk, Dariusz Grzebelus
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:531902

Transcriptional regulation of dominance at the self-incompatibility locus in Arabidopsis
Matteo Barois, Rita A. Batista, Pierre Baduel, Etienne Delannoy, Vincent Castric
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:540613

Transposable Element Expression During Cardiomyocyte Differentiation
Sophie Marlow, Rebecca V Berrens
abstract : poster
Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:537723

Transposable element products, functions, and regulatory networks in Arabidopsis thaliana
Carles Borredá, Basile Leduque, Vincent Colot, Leandro Quadrana
abstract : poster
Transposition Mechanisms and Applications
sciencesconf.org:icte2024:539900

Transposable elements biology : from their awakening to their insertion in the genome
Marion Varoqui, Mourdas Mohamed, Bruno Mugat, Maëlys Lemoine, Lisa Sévery, Alain Pélisson, Charlotte Grimaud, Severine Chambeyron
abstract : poster
Transposable Element Control and Epigenetics, Transposition Mechanisms and Applications
sciencesconf.org:icte2024:527381

Transposable elements driven adaptation to temperate environments in the Asian tiger mosquito Aedes albopictus
Tomas Carrasco-Valenzuela, Matthieu Boulesteix
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:538883

Transposable Elements in the UCSC Genome Browser
Maximilian Haeussler, Hubley Robert, Hiram Clawson
abstract : poster
Transposable Elements, Genome Evolution and Adaptation, Transposable Elements in Health and Disease
sciencesconf.org:icte2024:529232

Transposable elements in X-linked genes contribute to misexpression in Drosophila mojavensis and D. arizonae hybrids
William Vilas Boas Nunes, Daniel Siqueira de Oliveira, Claudia M A Carareto, Cristina Vieira
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:539022

Transposable Elements silencing by the histone demethylase dLSD1 is required to achieve normal wing size
SELMI INES, TEXIER MANUELA, Aguirrenbegoa Marion, Merce Clementine, Fraisse-lepourry Laurence, Mugat Bruno, Mourdas Mohamed, Chambeyron Séverine, Cribbs David, Di Stefano Luisa
abstract : poster
Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:540039

Transposon control in satellite cells during quiescence and differentiation
Matthew Borok, Louai Zaidan, Perla Geara, Léo Machado, Philippos Mourikis, Fred Relaix
abstract : poster
Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:527072

Transposon insertions associate with transcriptional variability linked to rice domestication and breeding
Raúl Castanera, Noemia Morales-Díaz, Sonal Gupta, Michael D. Purugganan, Josep Mª Casacuberta
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:529604

Transposon-mediated genic rearrangements underlie variation in small RNA pathways
Gaotian ZHANG, Marie-Anne Félix, Erik Andersen
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:525735

Uncoupling programmed DNA cleavage and repair scrambles the Paramecium somatic genome
Julien Bischerour, Olivier Arnaiz, Coralie ZANGARELLI, VInciane Régnier, Virginie Ropars, Florence Iehl, Jean-Baptiste Charbonnier, Mireille Bétermier
abstract : poster
Transposable Elements, Genome Evolution and Adaptation, Transposition Mechanisms and Applications
sciencesconf.org:icte2024:538361

Understanding the role of L1 retrotransposons in the context of dopaminergic neuropathology
Maria Eugenia Ferreiro, Juan Manuel Botto, Gabriela Oana Bodea, Geoffrey J. Faulkner
abstract : poster
Transposable Elements in Health and Disease
sciencesconf.org:icte2024:528328

Universal signatures of transposable element compartmentalization across eukaryotic genes
Landen Gozashti, Russell Corbett-Detig
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:518340

Unravelling Epigenetic Dynamics in Spirodela polyrhiza: Insights into Transposable Element Regulation
Rodolphe Dombey, Verónica Barragán Borrero, Daniel Buendía Ávila, Arturo Ponce Mañe, José Mario Vargas Guerrero, Rana Elias, Arturo Marí Ordóñez
abstract : poster
Transposable Element Control and Epigenetics
sciencesconf.org:icte2024:520916

When lianas and trees talk DNA: new insights into the genetic exchanges in plants
Emilie Aubin, Cristel Llauro, Joseph Garrigue, Marie MIROUZE, Olivier Panaud, Moaine El Baidouri
abstract : poster
Transposable Elements, Genome Evolution and Adaptation
sciencesconf.org:icte2024:523863

Why using the right genome assembly matters.
Lauryn Deaville, Rebecca Berrens
abstract : poster
Transposable Element Control and Epigenetics, Transposition Mechanisms and Applications
sciencesconf.org:icte2024:539975

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