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Program > Browse abstracts by speaker > Loot Céline

Integron cassettes commonly integrate into bacterial genomes via widespread non-classical attG sites
Céline Loot  1@  , Gael A Millot  2  , Egill Richard  1, 3  , Eloi Littner  3, 4, 5  , Claire Vit  1, 3  , Frédéric Lemoine  2  , Bertrand Néron  2  , Jean Cury  6  , Baptiste Darracq  1, 3  , Théophile Niault  1, 3  , Delphine Lapaillerie  7, 8  , Vincent Parissi  7, 8  , Eduardo Pc Rocha  9  , Didier Mazel  1  
1 : Institut Pasteur, Université Paris Cité, CNRS UMR 3525, Unité Plasticité du Génome Bactérien
Institut Pasteur de Paris
F-75015 Paris -  France
2 : Institut Pasteur, Université Paris Cité, Bioinformatics and Biostatistics Hub
Institut Pasteur de Paris
F-75015 Paris -  France
3 : Sorbonne Université, Collège doctoral
Sorbonne Université
F-75005 Paris -  France
4 : Institut Pasteur, Université Paris Cité, CNRS UMR 3525, Microbial Evolutionary Genomics
Institut Pasteur de Paris
F-75015 Paris -  France
5 : DGA CBRN Defence
Direction générale de l'Armement (DGA)
91710 Vert-le-Petit -  France
6 : Université Paris-Saclay, Inria, Laboratoire de Recherche en Informatique, CNRS UMR 8623
Université Paris-Saclay,Sorbonne Universités
Orsay -  France
7 : Université de Bordeaux, CNRS UMR5234, Département de Sciences Biologiques et Médicales
Université de Bordeaux (Bordeaux, France)
Bordeaux -  France
8 : Viral DNA Integration and Chromatin Dynamics Network (DyNAVir)
Université de Bordeaux (Bordeaux, France)
Bordeaux -  France
9 : Institut Pasteur, Université Paris Cité, CNRS UMR 3525, Microbial Evolutionary Genomics
Institut Pasteur de Paris
F-75015 -  France

 

Integrons are genetic elements involved in bacterial adaptation. They contain an integrase and an array of gene cassettes whose expression decreases with distance from the beginning of the array. Stress activates the integrase leading to capture and shuffling of cassettes through site-specific recombination between attC and attI integron sites. The concomitant changes in cassette expression allow the exploration of diverse phenotypic combinations. Here we demonstrate that the integrase also catalyzes cassette integration into bacterial genomes outside of the known att integron sites. Once integrated, these cassettes can be expressed if located near bacterial promoters and can be excised at the integration point or outside, inducing chromosomal modifications in the latter case. Analysis of more than 5 × 105 independent integration events revealed a very large genomic integration landscape. We identified consensus recombination sequences, named attG sites, which differ greatly in sequence and structure from classical att sites. These results unveil an alternative route for dissemination of adaptive functions in bacteria and expand the role of integrons in bacterial evolution.

 


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